miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|18231294|gb|AV935497.1|AV935497 TGATTTTGTGATCCGATCTTATTTGGACGGCATAAGGCAAATNAAATGGGTCAAGTCGACGGCAAAGCATGCATCTGCTT
ATATAGTACTCCCTCCGTTCCTAAATATAAGACCTTTTAGAAATTACATTATAAGCTTCATACGGATGTACATAGACATA
TTTTATAATGTATAAATTCACTCATTTTGCTCCGTATGTAGTTTTCTAGTGAAAACTCTAAAAGGTCTTATATTTAGGAA
CCGATGGAGTACAAACACCAACTCGCCCTTTTTTTAAACCATCACCAAGTCGCCTTTAGTAGTAGAGATGTTTTACGAAC
CAAACACACACAAATGCAGCCGGTGATACCTACGCGCTGGCTGGAATGCTGAAAAATAATTCTTTTTGGTGGTACAACGT
CTTAGTGCTACTGTAAACAAACGAATGACTGGACTGGCATATGAGAATTCAGATGCAACGACCTGGCAGGCACTACTATC
CCTTCAAGAGGCTGTCTCACAAAGTGGCAATCCTTCACAACCTCGCGATGACCGCTTCAACCTCTGCAGGAGTGTAGAGG
TGGTAGCTGGGGGAGACATTCGCAATGTCAACATTGTTTGGGGTCACCTTTTCTTCCATAACCTGCTTCAGGATAGAAAG
GGCTATGGTCTCTGCCTCAGCGATTGTCAATTCCTTGTTGTACTGCTCTTGTAATGAGCTATCAGCTCCT




Most similar to sp|Q9LSU1|PSA5_ORYSJ

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9LSU1|PSA5_ORYSJ Proteasome subunit alpha type-5 OS=Oryza
           sativa subsp. japonica GN=PAE1 PE=2 SV=1
          Length = 237

 Score =  118 bits (296), Expect = 3e-26
 Identities = 60/64 (93%), Positives = 62/64 (96%)
 Frame = -2

Query: 709 GADSSLQEQYNKELTIAEAETIALSILKQVMEEKVTPNNVDIANVSPSYHLYTPAEVEAV 530
           GADSSLQEQYNKELT+ EAETIALSILKQVMEEKVTPNNVDIA VSP+YHLYTPAEVEAV
Sbjct: 174 GADSSLQEQYNKELTLQEAETIALSILKQVMEEKVTPNNVDIAKVSPNYHLYTPAEVEAV 233

Query: 529 IARL 518
           IARL
Sbjct: 234 IARL 237